The problem: Binary on linux for parallel running


Clicked A Few Times
Hello, everyone

When I download the binary version of Nwchem 6.0.

tar -xjvf Nwchemxxx.tar.bz2

then I set the nwchem.p:
li localhost.localdomain 2 /home/li/workdir/nwchem6.0/bin/nwchem /home/li/workdir/nwchem6.0/bin/test


run parallel on the example-tcepolar
../../bin/parallel ../../bin/nwchem /home/li/workdir/nwchem6.0/examples/tcepolar/ccsd_polar_small.nw


last the err happen:
  warning:::::::::::::: from_compile
  NWCHEM_BASIS_LIBRARY is: </home/d3y133/nwchem-releases/nwchem-6.0-linux/src/basis/libraries/>
  but file does not exist or you do not have access to it !


And I find the JOB information as below:

====================================

          Job information
---------------

   hostname      = localhost.localdomain
program = /home/li/workdir/nwchem6.0/bin/nwchem
date = Fri Nov 12 02:25:23 2010

   compiled      = Tue_Nov_09_10:54:15_2010
source = /home/d3y133/nwchem-releases/nwchem-6.0-linux
nwchem branch = 6.0
input = /home/li/workdir/nwchem6.0/examples/tcepolar/ccsd_polar_small.nw
prefix = ccsd_polar_small.
data base = ./ccsd_polar_small.db
status = startup
nproc = 2
time left = -1s

===========================================

So, I believe that the pathway of source of binary version is wrong, but I do not know how modify it?

who can help me?

javacfish

Forum Vet
Quote:Javacfish Nov 11th 10:38 am
Hello, everyone

When I download the binary version of Nwchem 6.0.

tar -xjvf Nwchemxxx.tar.bz2

then I set the nwchem.p:
li localhost.localdomain 2 /home/li/workdir/nwchem6.0/bin/nwchem /home/li/workdir/nwchem6.0/bin/test


run parallel on the example-tcepolar
../../bin/parallel ../../bin/nwchem /home/li/workdir/nwchem6.0/examples/tcepolar/ccsd_polar_small.nw


last the err happen:
  warning:::::::::::::: from_compile
  NWCHEM_BASIS_LIBRARY is: </home/d3y133/nwchem-releases/nwchem-6.0-linux/src/basis/libraries/>
  but file does not exist or you do not have access to it !


And I find the JOB information as below:

====================================

          Job information
---------------

   hostname      = localhost.localdomain
program = /home/li/workdir/nwchem6.0/bin/nwchem
date = Fri Nov 12 02:25:23 2010

   compiled      = Tue_Nov_09_10:54:15_2010
source = /home/d3y133/nwchem-releases/nwchem-6.0-linux
nwchem branch = 6.0
input = /home/li/workdir/nwchem6.0/examples/tcepolar/ccsd_polar_small.nw
prefix = ccsd_polar_small.
data base = ./ccsd_polar_small.db
status = startup
nproc = 2
time left = -1s

===========================================

So, I believe that the pathway of source of binary version is wrong, but I do not know how modify it?

who can help me?

javacfish


There are two ways to get this set right, both are described in the INSTALL file that came with the binary:

1. Generate the .nwchemrc by running the script in the etc directory.
2. Set the environment variable NWCHEM_BASIS_LIBRARY to point to the location where you have the directory with the basis set libraries.

Cheers,

Bert


Forum >> NWChem's corner >> Compiling NWChem