Problems compiling nwchem with openSUSE, gcc, mpich

Clicked A Few Times

5:50:56 AM PDT - Mon, Jul 30th 2012
Hi, I was compiling NWChem 6.1.1 and got the following error message: ...... /home/fan_group/nwchem-6.1.1/lib/LINUX64/libnwpwlib.a(CMatrix-mpi.o): In function `cmatrix_getdiags_': CMatrix-mpi.F:(.text+0x1184): undefined reference to `mpi_bcast_' CMatrix-mpi.F:(.text+0x1202): undefined reference to `mpi_allreduce_' CMatrix-mpi.F:(.text+0x13c5): undefined reference to `mpi_bcast_' CMatrix-mpi.F:(.text+0x1440): undefined reference to `mpi_allreduce_' ...... /home/fan_group/nwchem-6.1.1/lib/LINUX64/libnwpwlib.a(CMatrix-mpi.o): In function `cmatrix_start_rot_': CMatrix-mpi.F:(.text+0x3a4e): undefined reference to `mpi_irecv_' CMatrix-mpi.F:(.text+0x3ab3): undefined reference to `mpi_isend_' collect2: ld returned 1 exit status make: *** [all] Error 1 setenv LARGE_FILES TRUE setenv USE_NOFSCHECK TRUE setenv LARGE_FILES TRUE setenv USE_NOFSCHECK TRUE setenv NWCHEM_TARGET LINUX64 setenv NWCHEM_MODULES all setenv TCGRSH /usr/bin/ssh setenv USE_MPI y setenv USE_MPIF y setenv USE_MPIF4 y setenv MPI_LOC /home/fan_group/mpich-1.2.6 setenv MPI_LIB $MPI_LOC/lib setenv MPI_INCLUDE $MPI_LOC/include setenv NWCHEM_TOP /home/fan_group/nwchem-6.1.1 setenv NWCHEM_EXEC /home/fan_group/nwchem-6.1.1/bin/LINUX64/nwchem setenv BLASOPT "-L/home/fan_group/intel/mkl/10.2.5.035/lib/em64t -lmkl_intel_ilp64 -lmkl_sequential -lmkl_core -lmkl_lapack" setenv LIBMPI "-lfmpich -lmpich -lpmpich" setenv FC $MPI_LOC/bin/mpif90 setenv F77 $MPI_LOC/bin/mpif77 setenv CC $MPI_LOC/bin/mpicc

Forum Vet

12:22:24 PM PDT - Mon, Jul 30th 2012
Could you please send us the output of the following command nm /home/fan_group/mpich-1.2.6/lib/libmpich \| grep -i allreduce

Clicked A Few Times

5:51:00 PM PDT - Mon, Jul 30th 2012

allreducef.o:

                U MPI_Allreduce

0000000000000000 W mpi_allreduce__
0000000000000000 T pmpi_allreduce__

                U PMPI_Allreduce

                U PMPI_Allreduce

allreduce.o:
0000000000000000 W MPI_Allreduce
0000000000000000 T PMPI_Allreduce
00000000000002df t inter_Allreduce
0000000000007635 t intra_Allreduce
allreducef.o:

                U MPI_Allreduce

0000000000000000 W mpi_allreduce__
0000000000000000 T pmpi_allreduce__

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

allreduce.o:
0000000000000000 W MPI_Allreduce
0000000000000000 T PMPI_Allreduce
00000000000002df t inter_Allreduce
0000000000007635 t intra_Allreduce
allreducef.o:

                U MPI_Allreduce

0000000000000000 W mpi_allreduce__
0000000000000000 T pmpi_allreduce__

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000492 T _ZNK3MPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE
0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

                U _ZNK3MPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

Quote:Edoapra Jul 30th 7:22 pm

Could you please send us the output of the following command

nm /home/fan_group/mpich-1.2.6/lib/lib*mpich* | grep -i allreduce

Clicked A Few Times

5:53:07 PM PDT - Mon, Jul 30th 2012

allreducef.o:

                U MPI_Allreduce

0000000000000000 W mpi_allreduce__
0000000000000000 T pmpi_allreduce__

                U PMPI_Allreduce

                U PMPI_Allreduce

allreduce.o:
0000000000000000 W MPI_Allreduce
0000000000000000 T PMPI_Allreduce
00000000000002df t inter_Allreduce
0000000000007635 t intra_Allreduce
allreducef.o:

                U MPI_Allreduce

0000000000000000 W mpi_allreduce__
0000000000000000 T pmpi_allreduce__

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

allreduce.o:
0000000000000000 W MPI_Allreduce
0000000000000000 T PMPI_Allreduce
00000000000002df t inter_Allreduce
0000000000007635 t intra_Allreduce
allreducef.o:

                U MPI_Allreduce

0000000000000000 W mpi_allreduce__
0000000000000000 T pmpi_allreduce__

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U PMPI_Allreduce

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000492 T _ZNK3MPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE
0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

                U _ZNK3MPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

                U MPI_Allreduce

0000000000000000 W _ZNK4PMPI9Intracomm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE

Quote:Edoapra Jul 30th 7:22 pm

Could you please send us the output of the following command

nm /home/fan_group/mpich-1.2.6/lib/lib*mpich* | grep -i allreduce

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