NWchem-6.5 compilation: Segmentation fault

1. 0 0x7F0085E11467
   
2. 1 0x7F0085E11AAE
   
3. 2 0x7F00850FC66F
   
4. 3 0x7F008514D2F1
   
5. 4 0x7F0084BEFC8B
   
6. 5 0x7F0086160157
   
7. 6 0x7F00861824E2
   
8. 7 0x2B72F82 in tcgi_alt_pbegin
   
9. 8 0x2B73035 in tcgi_pbegin
   
10. 9 0x2B71D6B in pbeginf_
    
11. 10 0x406940 in nwchem at nwchem.F:84
    

 $ ../ga-5-3/configure --prefix=/home/AnastasiaSycheva/source/Nwchem-6.5/src/tools/install --with-tcgmsg --with-mpi=-I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -pthread -lmpi_usempi -lmpi_mpifh -lmpi /usr/lib64/openmpi --enable-peigs --enable-underscoring --disable-mpi-tests --without-scalapack --without-lapack --without-blas --with-mpi-ts CC=gcc F77=gfortran FFLAGS=-fno-aggressive-loop-optimizations ARMCI_DEFAULT_SHMMAX_UBOUND=131072

1. 1. --------- ##
      
   2. Platform. ##
      
   3. --------- ##
      

1. 1. ----------- ##
      
   2. Core tests. ##
      
   3. ----------- ##
      

#include <ac_nonexistent.h>

                           ^

#include <ac_nonexistent.h>

                           ^

#include <minix/config.h>

                         ^

#include <minix/config.h>

                         ^

    chokeonthis

    ^

    chokeonthis

    ^

    chokeonthis

    ^

    chokeonthis

    ^

    chokeonthis

    ^

if (sizeof ((_Bool)))

                   ^

#include <ffio.h>

                 ^

#include <ffio.h>

                 ^

#include <sys/fsid.h>

                     ^

#include <sys/fsid.h>

                     ^

#include <sys/fstyp.h>

                      ^

#include <sys/fstyp.h>

                      ^

#include <sys/iosw.h>

                     ^

#include <sys/iosw.h>

                     ^

#include <windows.h>

                    ^

#include <windows.h>

                    ^

   < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))];

                                                    ^

static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1)

           ^

if (sizeof ((off_t)))

                   ^

if (sizeof ((pid_t)))

                   ^

return *(signal (0, 0)) (0) == 1;

^

if (sizeof ((size_t)))

                    ^

union semun arg;

            ^

#include <vfork.h>

                  ^

#include <vfork.h>

                  ^

char fork ();

     ^

char floor ();

     ^

char floor ();

     ^

char modf ();

     ^

char pow ();

     ^

char sqrt ();

     ^

char hypot ();

     ^

char bcopy ();

     ^

char bzero ();

     ^

char memcpy ();

     ^

char memset ();

     ^

char strchr ();

     ^

char strdup ();

     ^

char strstr ();

     ^

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

   chokeonthis                                                         

    1

/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -version -fno-aggressive-loop-optimizations -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/4.8.5/finclude -o /tmp/ccdiWUhx.s

as -v --64 -o /tmp/cckkijfN.o /tmp/ccdiWUhx.s

/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/collect2 --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. /tmp/cckkijfN.o -lgfortran -lm -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o

/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -version -fno-aggressive-loop-optimizations -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/4.8.5/finclude -o /tmp/ccyPuJOv.s

as -v --64 -o /tmp/ccssrS8L.o /tmp/ccyPuJOv.s

/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/collect2 --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. /tmp/ccssrS8L.o -lgfortran -lm -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o

     call dtime                                                        

                                                                       1

     call etime                                                        

                                                                       1

             use f90_unix_env                                          

                1

             use f90_unix                                              

                1

1. 1. ---------------------- ##
      
   2. Running config.status. ##
      
   3. ---------------------- ##
      

 CONFIG_FILES    = 

 CONFIG_HEADERS  = 

 CONFIG_LINKS    = 

 CONFIG_COMMANDS = 

 $ ./config.status 

1. 1. ---------------- ##
      
   2. Cache variables. ##
      
   3. ---------------- ##
      

1. 1. ----------------- ##
      
   2. Output variables. ##
      
   3. ----------------- ##
      

1. 1. ----------- ##
      
   2. confdefs.h. ##
      
   3. ----------- ##
      

1. define PACKAGE_NAME "Global Arrays (GA)"
   
2. define PACKAGE_TARNAME "ga"
   
3. define PACKAGE_VERSION "5.3"
   
4. define PACKAGE_STRING "Global Arrays (GA) 5.3"
   
5. define PACKAGE_BUGREPORT "hpctools@pnl.gov"
   
6. define PACKAGE_URL "http://www.emsl.pnl.gov/docs/global/"
   
7. define LINUX 1
   
8. define SYSV 1
   
9. define PACKAGE "ga"
   
10. define VERSION "5.3"
    
11. define MSG_COMMS_MPI 1
    
12. define ENABLE_PEIGS 1
    
13. define ENABLE_PROFILING 0
    
14. define STDC_HEADERS 1
    
15. define HAVE_SYS_TYPES_H 1
    
16. define HAVE_SYS_STAT_H 1
    
17. define HAVE_STDLIB_H 1
    
18. define HAVE_STRING_H 1
    
19. define HAVE_MEMORY_H 1
    
20. define HAVE_STRINGS_H 1
    
21. define HAVE_INTTYPES_H 1
    
22. define HAVE_STDINT_H 1
    
23. define HAVE_UNISTD_H 1
    
24. define __EXTENSIONS__ 1
    
25. define _ALL_SOURCE 1
    
26. define _GNU_SOURCE 1
    
27. define _POSIX_PTHREAD_SEMANTICS 1
    
28. define _TANDEM_SOURCE 1
    
29. define LINUX64 1
    
30. define HAVE_ARMCI_GROUP_COMM 1
    
31. define HAVE_ARMCI_INITIALIZED 1
    
32. define HAVE_ARMCI_NOTIFY 1
    
33. define HAVE_ARMCI_MSG_INIT 1
    
34. define HAVE_ARMCI_MSG_FINALIZE 1
    
35. define HAVE_ARMCI_STRIDE_INFO_INIT 1
    
36. define NEED_DELAY_TCGMSG_MPI_STARTUP 0
    
37. define HAVE_DIRENT_H 1
    
38. define HAVE__BOOL 1
    
39. define HAVE_STDBOOL_H 1
    
40. define STDC_HEADERS 1
    
41. define HAVE_SYS_WAIT_H 1
    
42. define HAVE_ASSERT_H 1
    
43. define HAVE_ERRNO_H 1
    
44. define HAVE_FCNTL_H 1
    
45. define HAVE_FFIO_H 0
    
46. define HAVE_LIMITS_H 1
    
47. define HAVE_LINUX_LIMITS_H 1
    
48. define HAVE_MALLOC_H 1
    
49. define HAVE_MATH_H 1
    
50. define HAVE_STDDEF_H 1
    
51. define HAVE_STDINT_H 1
    
52. define HAVE_STDIO_H 1
    
53. define HAVE_STDLIB_H 1
    
54. define HAVE_STRING_H 1
    
55. define HAVE_STRINGS_H 1
    
56. define HAVE_SYS_FILE_H 1
    
57. define HAVE_SYS_FSID_H 0
    
58. define HAVE_SYS_FSTYP_H 0
    
59. define HAVE_SYS_IOCTL_H 1
    
60. define HAVE_SYS_IOSW_H 0
    
61. define HAVE_SYS_IPC_H 1
    
62. define HAVE_SYS_MMAN_H 1
    
63. define HAVE_SYS_MOUNT_H 1
    
64. define HAVE_SYS_PARAM_H 1
    
65. define HAVE_SYS_SEM_H 1
    
66. define HAVE_SYS_SHM_H 1
    
67. define HAVE_SYS_STATFS_H 1
    
68. define HAVE_SYS_STAT_H 1
    
69. define HAVE_SYS_STATVFS_H 1
    
70. define HAVE_SYS_TIME_H 1
    
71. define HAVE_SYS_TYPES_H 1
    
72. define HAVE_SYS_VFS_H 1
    
73. define HAVE_TIME_H 1
    
74. define HAVE_UNISTD_H 1
    
75. define HAVE_WINDOWS_H 0
    
76. define restrict __restrict
    
77. define HAVE_LONG_DOUBLE 1
    
78. define RETSIGTYPE void
    
79. define HAVE_FSEEKO 1
    
80. define FUNCTION_NAME __func__
    
81. define HAVE_PROGNAME 1
    
82. define PROGNAME __progname
    
83. define HAVE_SYS_WEAK_ALIAS_PRAGMA 1
    
84. define SIZEOF_VOIDP 8
    
85. define SIZEOF_CHAR 1
    
86. define SIZEOF_SHORT 2
    
87. define SIZEOF_INT 4
    
88. define SIZEOF_LONG 8
    
89. define SIZEOF_LONG_LONG 8
    
90. define SIZEOF_FLOAT 4
    
91. define SIZEOF_DOUBLE 8
    
92. define SIZEOF_LONG_DOUBLE 16
    
93. define HAVE_FORK 1
    
94. define HAVE_VFORK 1
    
95. define HAVE_WORKING_VFORK 1
    
96. define HAVE_WORKING_FORK 1
    
97. define HAVE_STDLIB_H 1
    
98. define HAVE_UNISTD_H 1
    
99. define HAVE_SYS_PARAM_H 1
    
100. define HAVE_GETPAGESIZE 1
     
101. define HAVE_MMAP 1
     
102. define HAVE_SYS_SELECT_H 1
     
103. define HAVE_SYS_SOCKET_H 1
     
104. define SELECT_TYPE_ARG1 int
     
105. define SELECT_TYPE_ARG234 (fd_set *)
     
106. define SELECT_TYPE_ARG5 (struct timeval *)
     
107. define HAVE_FLOOR 1
     
108. define HAVE_MODF 1
     
109. define HAVE_POW 1
     
110. define HAVE_SQRT 1
     
111. define HAVE_HYPOT 1
     
112. define HAVE_BCOPY 1
     
113. define HAVE_BZERO 1
     
114. define HAVE_CREATE_SHARED_REGION 0
     
115. define HAVE_FTRUNCATE 1
     
116. define HAVE_GETHOSTBYNAME 1
     
117. define HAVE_GETHOSTNAME 1
     
118. define HAVE_GETPAGESIZE 1
     
119. define HAVE_GETTIMEOFDAY 1
     
120. define HAVE_MEMALIGN 1
     
121. define HAVE_MEMCPY 1
     
122. define HAVE_MEMSET 1
     
123. define HAVE_MUNMAP 1
     
124. define HAVE_PAUSE 1
     
125. define HAVE_POSIX_MEMALIGN 1
     
126. define HAVE_PUTENV 1
     
127. define HAVE_SELECT 1
     
128. define HAVE_SETENV 1
     
129. define HAVE_SHARED_MALLOC 0
     
130. define HAVE_SHMALLOC 0
     
131. define HAVE_SOCKET 1
     
132. define HAVE_SRAND 1
     
133. define HAVE_SRANDOM 1
     
134. define HAVE_STRCHR 1
     
135. define HAVE_STRDUP 1
     
136. define HAVE_STRERROR 1
     
137. define HAVE_STRSTR 1
     
138. define HAVE_STRTOL 1
     
139. define NOFORT 0
     
140. define ENABLE_F77 1
     
141. define F77_FUNC(name,NAME) name ## _
     
142. define F77_FUNC_(name,NAME) name ## _
     
143. define SIZEOF_F77_INTEGER 8
     
144. define SIZEOF_F77_REAL 4
     
145. define SIZEOF_F77_DOUBLE_PRECISION 8
     
146. define HAVE_DTIME 0
     
147. define HAVE_ETIME 0
     
148. define F77_FLUSH flush
     
149. define HAVE_F77_FLUSH 1
     
150. define F77_GETARG_DECL intrinsic GETARG
     
151. define F77_GETARG GETARG
     
152. define F77_GETARG_ARGS i,s
     
153. define F77_IARGC IARGC
     
154. define FXX_MODULE
     
155. define F2C_HIDDEN_STRING_LENGTH_AFTER_ARGS 1
     
156. define HAVE_BLAS 0
     
157. define BLAS_SIZE 8
     
158. define HAVE_LAPACK 0
     
159. define HAVE_SCALAPACK 0
     
160. define HAVE_DLFCN_H 1
     
161. define LT_OBJDIR ".libs/"
     
162. define ENABLE_ARMCI_MEM_OPTION 1
     
163. define STATS 1
     
164. define VERIFY 1
     
165. define NOUSE_MMAP 1
     

1. 1. ---------------------- ##
      
   2. Running config.status. ##
      
   3. ---------------------- ##
      

 CONFIG_FILES    = 

 CONFIG_HEADERS  = 

 CONFIG_LINKS    = 

 CONFIG_COMMANDS = 

 $ ./config.status 

1. 0 0x7FC65CB02467
   
2. 1 0x7FC65CB02AAE
   
3. 2 0x7FC65BC4366F
   
4. 3 0x7FC65BC942D1
   
5. 4 0x7FC65B736C8B
   
6. 5 0x7FC65D474157
   
7. 6 0x7FC65D4964E2
   
8. 7 0x2BB98F9 in tcgi_alt_pbegin
   
9. 8 0x2BB99AF in tcgi_pbegin
   
10. 9 0x2BB8AE3 in pbeginf_
    
11. 10 0x4F4519 in nwchem at nwchem.F:84