problem encountered when running prepare


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I have same problem with prepare task.

input file:
echo

scratch_dir /media/science/tmp
permanent_dir /media/science/nwchem-data/
memory total 8192 mb
start diamond
title "diamond"

prepare
 system diamond_em
 new_top new_seq
 solvate
end

task prepare

md
 system diamond_em
 sd 100
end

task md optimize

I try pdb-files:
1 - http://www.wellesley.edu/Chemistry/Flick/molecules/diamond.pdb
2 - http://www.bris.ac.uk/Depts/Chemistry/MOTM/diamond/diamond.pdb
3 - and ?reated in gabedit 2.3.7 3x3x3 unit cell