molecular dynamics output file


Click here for full thread
Clicked A Few Times
Hi
I have tried to run MD ( Tio2 example). For this work which I need .rst and .top files, generated by Prepare Task. For Prepare Task ,we should specify 6 files.(Tio2.nw ,Tio2.pdb ,Tio2.frg ,Tio2.seq,Tio.sgm ,amber.par ).
After running Prepare Task, I have .rst and .top files. Then I have tried to run the MD task (for example dynamics) but I encountered with the following error:
EOF encountered on topology files

I appreciate any comment.
Thanks.