Compiling NWCHEM on Ubuntu 12.04.2 LTS (not as administrator)


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NWCHEM_TOP
You forgot a forward-slash character "/" at the beginning of the env. variable definition

NWCHEM_TOP=hpc/puhome/john/nwchem-6.8.1
should be changed to
NWCHEM_TOP=/hpc/puhome/john/nwchem-6.8.1