| 3:59:05 PM PST - Mon, Jan 23rd 2012 |
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From the error message it appears that the prepare module did not find certain atoms in some of your residues. This is almost always a result of atoms names being different from the definitions in the NWChem database files. NWChem adheres strictly to the PDB atom naming convention.
Without access to your PDB file or the generated output file it is difficult to be more specific.
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